The different types of endocytosis
Endocytosis is a cellular process in which substances are brought into the cell. The material to be internalized is surrounded by an area of cell membrane, which then buds off inside the cell to form a vesicle containing the ingested material. Endocytosis includes pinocytosis (cell drinking) and phagocytosis (cell eating). It is a form of active transport.
The term was proposed by De Duve in 1963. Phagocytosis was discovered by Élie Metchnikoff in 1882.
Schematic drawing illustrating clathrin-mediated (left) and clathrin-independent endocytosis (right) of synaptic vesicle membranes.
Endocytosis pathways can be subdivided into four categories: namely, receptor-mediated endocytosis (also known as clathrin-mediated endocytosis), caveolae, pinocytosis, and phagocytosis.
- Clathrin-mediated endocytosis is mediated by the production of small (approx. 100 nm in diameter) vesicles that have a morphologically characteristic coat made up of the cytosolic protein clathrin. Clathrin-coated vesicles (CCVs) are found in virtually all cells and form domains of the plasma membrane termed clathrin-coated pits. Coated pits can concentrate large extracellular molecules that have different receptors responsible for the receptor-mediated endocytosis of ligands, e.g. low density lipoprotein, transferrin, growth factors, antibodies and many others.
- Study  in mammalian cells confirm a reduction in clathrin coat size in an increased tension environment. In addition, it suggests that the two apparently distinct clathrin assembly modes, namely coated pits and coated plaques, observed in experimental investigations might be a consequence of varied tensions in the plasma membrane.
- Caveolae are the most commonly reported non-clathrin-coated plasma membrane buds, which exist on the surface of many, but not all cell types. They consist of the cholesterol-binding protein caveolin (Vip21) with a bilayer enriched in cholesterol and glycolipids. Caveolae are small (approx. 50 nm in diameter) flask-shape pits in the membrane that resemble the shape of a cave (hence the name caveolae). They can constitute up to a third of the plasma membrane area of the cells of some tissues, being especially abundant in smooth muscle, type I pneumocytes, fibroblasts, adipocytes, and endothelial cells. Uptake of extracellular molecules is also believed to be specifically mediated via receptors in caveolae.
From left to right: Phagocytosis, Pinocytosis, Receptor-mediated endocytosis.
- Potocytosis is a form of receptor-mediated endocytosis that uses caveolae vesicles to bring molecules of various sizes into the cell. Unlike most endocytosis that uses caveolae to deliver contents of vesicles to lysosomes or other organelles, material endocytosed via potocytosis is released into the cytosol.
- Pinocytosis, which usually occurs from highly ruffled regions of the plasma membrane, is the invagination of the cell membrane to form a pocket, which then pinches off into the cell to form a vesicle (.5–5 µm in diameter) filled with a large volume of extracellular fluid and molecules within it (equivalent to ~100 CCVs). The filling of the pocket occurs in a non-specific manner. The vesicle then travels into the cytosol and fuses with other vesicles such as endosomes and lysosomes.
- Phagocytosis is the process by which cells bind and internalize particulate matter larger than around 0.75 µm in diameter, such as small-sized dust particles, cell debris, microorganisms and apoptotic cells. These processes involve the uptake of larger membrane areas than clathrin-mediated endocytosis and caveolae pathway.
More recent experiments have suggested that these morphological descriptions of endocytic events may be inadequate, and a more appropriate method of classification may be based upon the clathrin-dependence of particular pathways, with multiple subtypes of clathrin-dependent and clathrin-independent endocytosis. Mechanistic insight into non-phagocytic, clathrin-independent endocytosis has been lacking, but a recent study has shown how Graf1 regulates a highly prevalent clathrin-independent endocytic pathway known as the CLIC/GEEC pathway.
Principal components of endocytic pathway
The endocytic pathway of mammalian cells consists of distinct membrane compartments, which internalize molecules from the plasma membrane and recycle them back to the surface (as in early endosomes and recycling endosomes), or sort them to degradation (as in late endosomes and lysosomes). The principal components of the endocytic pathway are:
- Early endosomes are the first compartment of the endocytic pathway. Early endosomes are often located in the periphery of the cell, and receive most types of vesicles coming from the cell surface. They have a characteristic tubulo-vesicular structure (vesicles up to 1 µm in diameter with connected tubules of approx. 50 nm diameter) and a mildly acidic pH. They are principally sorting organelles where many endocytosed ligands dissociate from their receptors in the acid pH of the compartment, and from which many of the receptors recycle to the cell surface (via tubules). It is also the site of sorting into transcytotic pathway to later compartments (like late endosomes or lysosomes) via transvesicular compartments (like multivesicular bodies (MVB) or endosomal carrier vesicles (ECVs)).
- Late endosomes receive endocytosed material en route to lysosomes, usually from early endosomes in the endocytic pathway, from trans-Golgi network (TGN) in the biosynthetic pathway, and from phagosomes in the phagocytic pathway. Late endosomes often contain proteins characteristic of nucleosomes, mitochondria and mRNAs including lysosomal membrane glycoproteins and acid hydrolases. They are acidic (approx. pH 5.5), and are part of the trafficking pathway of mannose-6-phosphate receptors. Late endosomes are thought to mediate a final set of sorting events prior the delivery of material to lysosomes.
- Lysosomes are the last compartment of the endocytic pathway. Their chief function is to break down cellular waste products, fats, carbohydrates, proteins, and other macromolecules into simple compounds. These are then returned to the cytoplasm as new cell-building materials. To accomplish this, lysosomes use some 40 different types of hydrolytic enzymes, all of which are manufactured in the endoplasmic reticulum, modified in the Golgi apparatus and function in an acidic environment. The approximate pH of a lysosome is 4.8 and by electron microscopy (EM) usually appear as large vacuoles (1-2 µm in diameter) containing electron dense material. They have a high content of lysosomal membrane proteins and active lysosomal hydrolases, but no mannose-6-phosphate receptor. They are generally regarded as the principal hydrolytic compartment of the cell.
It was recently found that an eisosome serves as a portal of endocytosis in yeast.
The major route for endocytosis in most cells, and the best-understood, is that mediated by the molecule clathrin. This large protein assists in the formation of a coated pit on the inner surface of the plasma membrane of the cell. This pit then buds into the cell to form a coated vesicle in the cytoplasm of the cell. In so doing, it brings into the cell not only a small area of the surface of the cell but also a small volume of fluid from outside the cell.
Coats function to deform the donor membrane to produce a vesicle, and they also function in the selection of the vesicle cargo. Coat complexes that have been well characterized so far include coat protein-I (COP-I), COP-II, and clathrin. Clathrin coats are involved in two crucial transport steps: (i) receptor-mediated and fluid-phase endocytosis from the plasma membrane to early endosome and (ii) transport from the TGN to endosomes. In endocytosis, the clathrin coat is assembled on the cytoplasmic face of the plasma membrane, forming pits that invaginate to pinch off (scission) and become free CCVs. In cultured cells, the assembly of a CCV takes ~ 1min, and several hundred to a thousand or more can form every minute. The main scaffold component of clathrin coat is the 190-kD protein called clathrin heavy chain (CHC), which is associated with a 25- kD protein called clathrin light chain (CLC), forming three-legged trimers called triskelions.
Vesicles selectively concentrate and exclude certain proteins during formation and are not representative of the membrane as a whole. AP2 adaptors are multisubunit complexes that perform this function at the plasma membrane. The best-understood receptors that are found concentrated in coated vesicles of mammalian cells are the LDL receptor (which removes LDL from circulating blood), the transferrin receptor (which brings ferric ions bound by transferrin into the cell) and certain hormone receptors (such as that for EGF).
At any one moment, about 25% of the plasma membrane of a fibroblast is made up of coated pits. As a coated pit has a life of about a minute before it buds into the cell, a fibroblast takes up its surface by this route about once every 16 minutes. Coated vesicles formed from the plasma membrane have a diameter of about 36 nm and a lifetime measured in a few seconds. Once the coat has been shed, the remaining vesicle fuses with endosomes and proceeds down the endocytic pathway. The actual budding-in process, whereby a pit is converted to a vesicle, is carried out by clathrin assisted by a set of cytoplasmic proteins, which includes dynamin and adaptors such as adaptin.
Coated pits and vesicles were first seen in thin sections of tissue in the electron microscope by Matt Lions and Parker George. The importance of them for the clearance of LDL from blood was discovered by Richard G. Anderson, Michael S. Brown and Joseph L. Goldstein in 1977. Coated vesicles were first purified by Barbara Pearse, who discovered the clathrin coat molecule in 1976.
- Endocytosis. For example, coronavirus SARS-CoV-2 binds to the ACE2 receptor of the epithelial cell.
Endocytosis animation (1)
Endocytosis animation (2)
- Active transport
- ^ Rieger, R.; Michaelis, A.; Green, M.M. 1991. Glossary of Genetics.Classical and Molecular (Fifth edition). Springer-Verlag, Berlin, .
- ^ “Ilya Mechnikov – Biographical”. www.nobelprize.org. Retrieved updating.
- ^ a b Marsh, Mark (2001). Endocytosis. Oxford University Press. p. vii. ISBN updating.
- ^ , McMahon, H. T. & Boucrot, E. Molecular mechanism and physiological functions of clathrin-mediated endocytosis. Nature Reviews Molecular Cell Biology 12, updating).
- ^ Marsh, M.; McMahon, HT (July 1999). “The structural era of endocytosis”. Science. 285 (5425): 215–20. doi:10.1126/science.updating. PMID updating.
- ^ Irajizad, E.; Agrawal, A. (2017). “Clathrin polymerization exhibits high mechano-geometric sensitivity”. Soft Matter. 13 (7): 1455–1462. Bibcode:2017SMat…13.1455I. doi:10.1039/C6SM02623K. PMC 5452080. PMID updating.
- ^ Parton RG, Simons K (March 2007). “The multiple faces of caveolae”. Nature Reviews Molecular Cell Biology. 8 (3): 185–94. doi:10.1038/nrm2122. PMID updating. S2CID updating.
- ^ Mineo, Chieko; Anderson, Richard G. (2001). “Potocytosis”. Histochemistry and Cell Biology. 116 (2): 109–118. doi:10.1007/supdating. PMID updating.
- ^ Falcone S, Cocucci E, Podini P, Kirchhausen T, Clementi E, Meldolesi J (November 2006). “Macropinocytosis: regulated coordination of endocytic and exocytic membrane traffic events” (PDF). Journal of Cell Science. 119 (Pt 22): 4758–69. doi:10.1242/jcs.03238. PMID updating. S2CID updating.
- ^ Lundmark R, Doherty GJ, Howes MT, et al. (November 2008). “The GTPase-Activating Protein GRAF1 Regulates the CLIC/GEEC Endocytic Pathway”. Current Biology. 18 (22): 1802–8. doi:10.1016/j.cub.updating. PMC 2726289. PMID updating.
- ^ Mellman I (1996). “Endocytosis and molecular sorting”. Annual Review of Cell and Developmental Biology. 12: 575–625. doi:10.1146/annurev.cellbio.updating. PMID 8970738.
- ^ Mukherjee S, Ghosh RN, Maxfield FR (July 1997). “Endocytosis”. Physiological Reviews. 77 (3): 759–803. doi:10.1152/physrev.updating. PMID 9234965.
- ^ Stoorvogel W, Strous GJ, Geuze HJ, Oorschot V, Schwartz AL (May 1991). “Late endosomes derive from early endosomes by maturation”. Cell. 65 (3): 417–27. doi:10.1016/updating-C. PMID 1850321. S2CID updating.
- ^ Weissmann, G. – Studies on Lysosomes,1965)
- ^ Gruenberg J, Maxfield FR (August 1995). “Membrane transport in the endocytic pathway”. Current Opinion in Cell Biology. 7 (4): 552–63. doi:10.1016/updating. PMID 7495576.
- ^ Luzio JP, Rous BA, Bright NA, Pryor PR, Mullock BM, Piper RC (May 1, 2000). “Lysosome-endosome fusion and lysosome biogenesis”. Journal of Cell Science. 113 (9): 1515–24. doi:10.1242/jcs.updating. PMID updating. Retrieved updating.
- ^ Walther TC, Brickner JH, Aguilar PS, Bernales S, Pantoja C, Walter P (February 2006). “Eisosomes mark static sites of endocytosis”. Nature. 439 (7079): 998–1003. Bibcode:2006Natur.updatingW. doi:10.1038/nature04472. PMID updating. S2CID 2838121.
- ^ Kirchhausen, T.; Owen, D.; Harrison, S. C. (1 May 2014). “Molecular Structure, Function, and Dynamics of Clathrin-Mediated Membrane Traffic”. Cold Spring Harbor Perspectives in Biology. 6 (5): a016725. doi:10.1101/cshperspect.a016725. PMC 3996469. PMID updating.
- ^ Bitsikas, V; Corrêa IR, Jr; Nichols, BJ (17 September 2014). “Clathrin-independent pathways do not contribute significantly to endocytic flux”. eLife. 3: e03970. doi:10.7554/eLife.03970. PMC 4185422. PMID updating.
- ^ Benmerah A, Lamaze C (August 2007). “Clathrin-coated pits: vive la différence?”. Traffic. 8 (8): 970–82. doi:10.1111/j.updating.x. PMID updating.
- ^ Rappoport JZ (June 2008). “Focusing on clathrin-mediated endocytosis”. The Biochemical Journal. 412 (3): 415–23. doi:10.1042/BJupdating. PMID updating. S2CID updating.
- ^ Granseth B, Odermatt B, Royle SJ, Lagnado L (December 2007). “Clathrin-mediated endocytosis: the physiological mechanism of vesicle retrieval at hippocampal synapses”. The Journal of Physiology. 585 (Pt 3): 681–6. doi:10.1113/jphysiol.updating. PMC 2375507. PMID updating.
- ^ Robinson MS (March 1997). “Coats and vesicle budding”. Trends in Cell Biology. 7 (3): 99–102. doi:10.1016/Supdating. PMID updating.
- ^ Glick BS, Malhotra V (December 1998). “The curious status of the Golgi apparatus”. Cell. 95 (7): 883–9. doi:10.1016/Supdating. PMID 9875843.
- ^ Gaidarov I, Santini F, Warren RA, Keen JH (May 1999). “Spatial control of coated-pit dynamics in living cells”. Nature Cell Biology. 1 (1): 1–7. doi:10.1038/8971. PMID updating. S2CID updating.
- ^ Anderson, RG; Brown, MS; Goldstein, JL (March 1977). “Role of the coated endocytic vesicle in the uptake of receptor-bound low density lipoprotein in human fibroblasts”. Cell. 10 (3): 351–64. doi:10.1016/updating. PMID 191195. S2CID updating.
- ^ Pearse, BM (April 1976). “Clathrin: a unique protein associated with intracellular transfer of membrane by coated vesicles”. Proceedings of the National Academy of Sciences of the United States of America. 73 (4): 1255–9. Bibcode:1976PNAS…73.1255P. doi:10.1073/pnas.updating. PMC 430241. PMID 1063406.
- A comprehensive review of endocytosis and endocytic mechanisms by Doherty and McMahon
- Endocytosis at biologyreference.com
- Endocytosis – researching endocytic mechanisms at endocytosis.org
- Clathrin-mediated endocytosis ASCB Image & Video Library
- Types of Endocytosis (Animation)